Survival-associated meQTLs across different cancer types


We identified 23,432 meQTLs associated with patient overall survival across different cancer types at FDR < 0.05.


e.g., "BLCA"
e.g., "rs11600543"


Cancer type
SNP ID
SNP position (hg19)
Alleles (A/a)
log-rank test p-value
Sample size
Median survival time AA
Median survival time Aa
Median survival time aa
Dispaly
PRAD rs55893003 chr19:49988419 C/A 4.17E-5 487 30.53 33.3 26.8 KM Plot
PRAD rs55914521 chr9:34092425 C/G 1.92E-9 490 31.13 31.28 29.17 KM Plot
PRAD rs55976242 chr2:239200007 C/T 8.83E-6 487 31.07 30.2 11.57 KM Plot
PRAD rs55981216 chr8:39150257 GT/G 0.00014 471 32.13 31.15 25.17 KM Plot
PRAD rs55986836 chr12:10729404 A/G 5.1E-5 491 30.8 32.9 19.93 KM Plot
PRAD rs56004212 chr22:18450841 TA/T 8.51E-6 486 30.9 31.9 27.08 KM Plot
PRAD rs56013947 chr1:1157340 A/G 3.49E-9 490 31.27 30.73 13.73 KM Plot
PRAD rs56032215 chr7:135158786 G/GGTGCAATC 2.06E-9 491 30.53 32.52 3.03 KM Plot
PRAD rs56050353 chr12:9476165 A/G 0 479 4.87 25.5 31.38 KM Plot
PRAD rs56061480 chr12:722843 G/A 0.000142 487 31.33 28.48 22.67 KM Plot
PRAD rs56063253 chr17:58184138 A/G 1.76E-5 493 30.87 31 26.93 KM Plot
PRAD rs56090305 chr1:151115752 C/T 3.3E-13 483 30.8 30.77 20.32 KM Plot
PRAD rs56101588 chr7:135128106 A/C 2.85E-9 484 30.73 32.63 8.75 KM Plot
PRAD rs56199505 chr2:239193838 A/G 8.43E-6 490 31.07 30.35 11.57 KM Plot
PRAD rs56212613 chr10:99441430 A/C 9.1E-10 476 31.43 30.33 23.75 KM Plot